kottke.org posts about science
Is the recently revealed 47 million-year-old primate fossil a missing link or an overhyped publicity stunt?
But despite a television teaser campaign with the slogan “This changes everything” and comparisons to the moon landing and the Kennedy assassination, the significance of this discovery may not be known for years. An article to be published on Tuesday in PLoS ONE, a scientific journal, will report more prosaically that the scientists involved said the fossil could be a “stem group” that was a precursor to higher primates, with the caveat, “but we are not advocating this.”
From the scientific paper’s conclusion/significance section:
Darwinius masillae represents the most complete fossil primate ever found, including both skeleton, soft body outline and contents of the digestive tract. Study of all these features allows a fairly complete reconstruction of life history, locomotion, and diet. Any future study of Eocene-Oligocene primates should benefit from information preserved in the Darwinius holotype. Of particular importance to phylogenetic studies, the absence of a toilet claw and a toothcomb demonstrates that Darwinius masillae is not simply a fossil lemur, but part of a larger group of primates, Adapoidea, representative of the early haplorhine diversification.
This should provide a sufficient amount of “whoa” for the day: mathematically speaking, how are elephants and big cities the same? A: both cities and elephants have developed a similar level of efficiency in the distribution of resources and transportation.
Geoffrey West of the Santa Fe Institute and his colleagues Jim Brown and Brian Enquist have argued that a 3/4-power law is exactly what you’d expect if natural selection has evolved a transport system for conveying energy and nutrients as efficiently and rapidly as possible to all points of a three-dimensional body, using a fractal network built from a series of branching tubes — precisely the architecture seen in the circulatory system and the airways of the lung, and not too different from the roads and cables and pipes that keep a city alive.
(thx, john)
This week in the New Yorker, Elizabeth Kolbert tells us that up until modern times, there have been five big mass extinctions of life on Earth. Most biologists now agree that we are in the midst of the sixth big mass extinction, one caused by humans.
Currently, a third of all amphibian speicies, nearly a third of all reef-building corals, a quarter of all mammals, and an eighth of all birds are classified as “threatened with extinction.” These estimates do not include the species that humans have already wiped out or the species for which there are insignificant data. Nor do the figures take into account the projected effects of global warming or or ocean acidification. Nor, of course, can they anticipate the kinds of sudden, terrible collapses that are becoming almost routine.
See also a related audio clip by Kolbert, the Holocene extinction event, and colony collapse disorder.
What Makes Us Happy? asks Joshua Wolf Shenk in the June 2009 issue of The Atlantic. The article is a dual biography of two intertwined entities, a long-running study of 268 Harvard men and the study’s long-time principal investigator, George Vaillant. The study was started as a way to determine how people lived successful lives. Valliant’s main interpretation from decades of study is that how people respond or adapt to trouble correlates with their healthy aging.
At the bottom of the pile are the unhealthiest, or “psychotic,” adaptations — like paranoia, hallucination, or megalomania — which, while they can serve to make reality tolerable for the person employing them, seem crazy to anyone else. One level up are the “immature” adaptations, which include acting out, passive aggression, hypochondria, projection, and fantasy. These aren’t as isolating as psychotic adaptations, but they impede intimacy. “Neurotic” defenses are common in “normal” people. These include intellectualization (mutating the primal stuff of life into objects of formal thought); dissociation (intense, often brief, removal from one’s feelings); and repression, which, Vaillant says, can involve “seemingly inexplicable naivete, memory lapse, or failure to acknowledge input from a selected sense organ.” The healthiest, or “mature,” adaptations include altruism, humor, anticipation (looking ahead and planning for future discomfort), suppression (a conscious decision to postpone attention to an impulse or conflict, to be addressed in good time), and sublimation (finding outlets for feelings, like putting aggression into sport, or lust into courtship).
Shenk then goes on to evaluate Vaillant on his own terms, with some interesting results.
Chemist John Sutherland has discovered a process by which ordinary chemicals could spontaneously form RNA molecules, the suspected building blocks of the first life on Earth.
Scientists have long suspected that the first forms of life carried their biological information not in DNA but in RNA, its close chemical cousin. Though DNA is better known because of its storage of genetic information, RNA performs many of the trickiest operations in living cells. RNA seems to have delegated the chore of data storage to the chemically more stable DNA eons ago. If the first forms of life were based on RNA, then the issue is to explain how the first RNA molecules were formed.
Robert Wright has a new book out soon called The Evolution of God. Andrew Sullivan has a review.
From primitive animists to the legends of the first gods, battling like irrational cloud-inhabiting humans over the cosmos, Wright tells the story of how war and trade, technology and human interaction slowly exposed humans to the gods of others. How this awareness led to the Jewish innovation of a hidden and universal God, how the cosmopolitan early Christians, in order to market their doctrines more successfully, universalised and sanitised this Jewish God in turn, and how Islam equally included a civilising universalism despite its doctrinal rigidity and founding violence.
Last month’s issue of The Atlantic contained an excerpt.
For all the advances and wonders of our global era, Christians, Jews, and Muslims seem ever more locked in mortal combat. But history suggests a happier outcome for the Peoples of the Book. As technological evolution has brought communities, nations, and faiths into closer contact, it is the prophets of tolerance and love that have prospered, along with the religions they represent. Is globalization, in fact, God’s will?
I loved two of Wright’s previous books, The Moral Animal and especially Nonzero. (via marginal revolution)
[Note: spoilers.] Bones did it for me. As soon as he sat down next to Kirk on the shuttle, I was hooked. Loved Star Trek, wanted to go again as soon we got out.
J.J. Abrams did something kinda crazy with the film though. He took the entire Star Trek canon and tossed it out the window. Because of the whole time travel thing, the events that occurred in The Original Series, The Next Generation, Voyager, DS9, and the previous 10 movies will not happen. Which means that in terms of sequels to this film, the slate is pretty much clean for Abrams or whomever he passes it off to.
Well. Almost. Events in this alternate timeline unfold differently but the same. Even though the USS Kelvin was destroyed with Kirk’s father aboard, Kirk and the rest of the gang somehow all still end up on the Enterprise. But the destruction of an entire planet and 6 billion people should have a somewhat larger effect going forward.
Also worth noting is how the time travel in Trek compares with that on Lost, a show Abrams co-created and currently executive produces. On Lost (so far), the universe is deterministic: no matter who travels when, not much changes. Time travel can affect little details here and there, but the big events unfold the same way each time and every character remembers events unfolding in the same way, no matter when they are on the timeline. Star Trek’s universe is not that way; characters before time travel events remember events unfolding differently. According to the older Spock, the Romulan ship going back in time changed things. Kirk knew his dad, Vulcan wasn’t sucked into a black hole, etc.
On the excellent Bad Astronomy blog, Phil Plait doesn’t cover the time travel aspect of the film but reviews the rest of the science in the film.
And yeah, we do hear ships whoosh as they go to warp and all that, but that’s what we expect to hear, having evolved in an atmosphere which whooshes when things fly past us. I’d prefer that we hear nothing, but I accept that as a filmmaker’s prerogative to make the audience comfortable.
But I’ll add that for years I have complained about sounds in space, saying that done correctly, making things silent can add drama. That sentiment was proven here; the sudden silence as we leave the ship and fly into space with the doomed crewmember is really eerie and unsettling.
In the NY Times, David Hajdu tackles time travel of a different kind, arguing that the original Star Trek was not about science or the future; it was a nostalgic lens through which to view pop culture.
“Star Trek” was an early manifestation of our contemporary absorption with the pop culture of the past. The show’s creator, Gene Roddenberry, was a gifted hack writer for TV Westerns like “Have Gun, Will Travel” and cop shows like “Highway Patrol,” and “Star Trek,” though set in a nominally stylized future, was essentially a Western cop show. In fact, Roddenberry pitched the series to NBC as “Wagon Train” to the stars; and, as Captain Kirk noted in his log, the ship would venture out on “patrol,” cruising the galaxy like a city beat.
On the Zeitgedächtnis, or time-sense, of honeybees.
Flowers of a given species all produce nectar at about the same time each day, as this increases the chances of cross-pollination. The trick works because pollinators, which in most cases means the honeybee, concentrate foraging on a particular species into a narrow time-window. In effect the honeybee has a daily diary that can include as many as nine appointments — say, 10:00 a.m., lilac; 11:30 a.m., peonies; and so on. The bees’ time-keeping is accurate to about 20 minutes.
Bone is a springy and salty wonder that is proving much more functional within the human body than originally thought.
The skeleton is a multipurpose organ, offering a ready source of calcium for an array of biochemical tasks, and housing the marrow where blood cells are born. Yet above all the skeleton allows us to locomote, which means it gets banged up and kicked around. Paradoxically, it copes with the abuse and resists breaking apart in a major way by microcracking constantly. “Bone microcracks, that’s what it does,” Dr. Ritchie said. “That’s how stresses are relieved.” […] But like all forms of health care, bone repair doesn’t come cheap, and maintaining skeletal integrity consumes maybe 40 percent of our average caloric budget.
The article leads off with the story of Harry Eastlack, whose body repaired itself with bone-building cells no matter what the injury, essentially giving him a not-so-Wolverine-like second skeleton. Here’s a photo I found of Eastlack’s skeleton, which is housed at the Mutter Museum of the College of Physicians.
Have Spanish scientists found a cure for colony collapse disorder, which affects millions of honeybees around the world? The sole cause, according to the scientists, is a fungal parasite called nosema ceranae. This finding doesn’t jibe with the recent Scientific American article written by two American CCD investigators. They say that nosema is one factor out of many.
In the gut contents we found spores of nosema, single-celled fungal parasites that can cause bee dysentery. The spore counts in these and in subsequent samples, however, were not high enough to explain the losses. Molecular analysis of Hackenberg’s bees, performed by the other of us (Cox-Foster), also revealed surprising levels of viral infections of various known types. But no single pathogen found in the insects could explain the scale of the disappearance.
(via waxy)
Update: Some beekeepers have solved bee death problems in their hives by using comb with smaller cell sizes.
In case you weren’t aware, and I wasn’t for a long time, the foundation in common usage by beekeepers results in much larger bees than what you would find in a natural hive. I’ve measured sections of natural worker brood comb that are 4.6mm in diameter. This 4.6mm comb was drawn by a hive of commercial Carniolans and this 4.7mm comb was drawn on the first try by a package of commercial Carniolans. What most beekeepers use for worker brood is foundation that is 5.4mm in diameter. If you translate that into three dimensions, instead of one, that produces a bee that is about half again as large as is natural. By letting the bees build natural sized cells, I have virtually eliminated my Varroa and Tracheal mite problems.
The cell size in commercially available combs has been increased over the years to increase the honey yield. (thx, brian)
The cow genome has been published and the results show changes due to millions of years of natural selection but also to the thousands of years of selective breeding by humans.
Both types of cattle show evidence of natural selection in genes that appear to be involved in making the animals — large, horned and potentially dangerous — docile. In some breeds, specific variants of behavior-related genes are “fixed,” or seen in essentially every animal. Curiously, some of those genes are in regions that in the human genome seem to be involved in autism, brain development and mental retardation.
So…by “docile”, you really mean “mentally retarded”. (via long now)
Science magazines seem to write this list about once a year but they are always fun to read: thirteen things that science cannot explain. This version of the list includes the Kuiper cliff, tetraneutrons, cold fusion, and our old friend the Pioneer anomaly.
Nine words that came to us from science fiction and not science.
Deep space. One of the other defining features of outer space is its essential emptiness. In science fiction, this phrase most commonly refers to a region of empty space between stars or that is remote from the home world. E. E. “Doc” Smith seems to have coined this phrase in 1934. The more common use in the sciences refers to the region of space outside of the Earth’s atmosphere.
Ten steps to perform in the event that you have accidentally swallowed the Higgs boson.
7. Do you feel protons decaying? Grand Unification may be occurring near your vital organs. However, this may be caused by far less elegant X bosons — the poor man’s Higgs, as it were. We shall not deal with these “country cousins” here. Still, you must not use electroweak force in this situation. You must at least attempt to curb the force of your nuclei to delay Grand Unification. You would be wise to begin a preventive training regimen for your nuclei right away — Fermion My Wayward Son (Bloomsbury, 1996) contains the internationally accepted techniques.
This video explains how to counteract the “you’re not being open-minded” argument that atheists and scientists sometimes get when confronted by those who believe in the supernatural.
Trying to suggest that a lack of explanation is evidence that supernatural powers are at work is actually a contradiction. In effect what it’s saying is, “I can’t explain something, therefore I can explain it.”
(via buzzfeed)
Although it’s widely accepted that the scream heard when a lobster is dropped into a pot of boiling water is a bunch of hot air, it turns out that some crustaceans do feel pain, and have the capacity to remember it.
Some crabs that evacuated attacked the shell in the manner seen in a shell fight. Most crabs, however, did not evacuate at the stimulus level we used, but when these were subsequently offered a new shell, shocked crabs were more likely to approach and enter the new shell. Furthermore, they approached that shell more quickly, investigated it for a shorter time and used fewer cheliped probes within the aperture prior to moving in. Thus the experience of the shock altered future behaviour in a manner consistent with a marked shift in motivation to get a new shell to replace the one occupied. The results are consistent with the idea of pain in these animals.
And for a more eloquent take on the struggles of our shelled undersea edibles, there’s always David Foster Wallace’s riveting essay, “Consider the Lobster.”
via discover
Karrie Karahalios created a program that interprets conversations and generates real-time visual feedback. A social mirror of sorts.
The “clock” shows the progress of the talk. Three times a second, a color bar pops up showing who was speaking. The louder the speech, the longer the bar. Interruptions are shown as overlapping color bars. Every minute, a new circle of bars is rendered in a visual record akin to the rings of tree trunk.
Referred to as a “conversation clock,” it’s already been tested with kids with low-functioning autism, teaching them to vocalize. One speech specialist thinks it can help kids with Asperger’s, who tend to dominate conversations, learn not to “monologue” so much.
Marriage counselors are also using it to teach your husband how to shut up for five minutes.
Sea urchins have teeth so powerful they can munch through limestone. These teeth are composed of calcite, a form of calcium carbonate, which happens to be the same material in the limestone they’re snacking on. So how do they chomp through the rock without grinding down their tusks? By aligning the calcite crystals that make up their teeth.
The structure and composition of the tip, particularly the orientation of the calcite crystals, is exquisitely controlled.
Maybe as dentists investigate how to spur humans to generate teeth like sharks, they can devise a way to make them as strong as those of a sea urchin. A scary prospect when you think about playing hockey.
Australia celebrated Toad Day Out this past weekend, resulting in the deaths of thousands of toxic cane toads.
Cane toads were introduced to north Queensland canefields from South America in 1935 to eat pest beetles. The slimy interlopers couldn’t jump high enough to reach the beetles at the top of the cane stalks and, instead, rapidly spread in search of food. Millions of them now threaten many local species and spread diseases such as salmonella across northern Australia.
Ick. The hallucinogenic amphibians were profiled in the documentary Cane Toads: An Unnatural History. Ribbit in peace.
Crinoids, or sea lilies, are marine animals that resemble plants. Unlike its garden namesake, the sea lily doesn’t stay still, but creeps along to avoid becoming prey for sea urchins and other predators.
It seems they’ve also developed the ability to “shed” their stalk-like appendages.
“It’s the lizard’s tail strategy,” said Baumiller, who is also a curator in the UM Museum of Paleontology. “The sea lily just leaves the stalk end behind. The sea urchin is preoccupied going after that, and the sea lily crawls away.” And the speed at which they move—-three to four centimeters per second—-suggests that “in a race with a sea urchin, the sea lily would probably win.”
When on the move, they resemble graceful spiders in a hurry.
Crinoids are also the state fossil of Missouri, and inspired the design of Pokemon characters Lileep and Cradily.
An excerpt from one of Galileo Galilei’s letters to Don Virginio Cesarini:
Long experience has taught me this about the status of mankind with regard to matters requiring thought: the less people know and understand about them, the more positively they attempt to argue concerning them, while on the other hand to know and understand a multitude of things renders men cautious in passing judgment upon anything new.
Want more Galileo? The Istituto e Museo di Storia della Scienza in Florence is loaning out their exhibit, Galileo, the Medici and the Age of Astronomy to The Franklin in Philadelphia. It features one of the last two telescopes belonging to the astronomer, as well as his notes, paintings, and other instruments, including the cylindrical sundial and Michelangelo’s compass.
The coelacanth, a 400 million year old prehistoric fish once thought to be extinct, has undergone a CT scan. Forty eggs were found inside of the large, frozen bodies of the two coelacanth tested, originally caught off the coast of Tanzania and then shipped to Japan for study.
The coelacanth young are thought to hatch inside of the mother and grow to 30cm before their live birth, when they swim outside of her body, looking identical to their parents, only tiny and cute. The discovery of the eggs could contribute to evidence that the ancient ocean dweller is the missing link between fish and amphibians:
Many scientists believe that the unique characteristics of the coelacanth represent an early step in the evolution of fish to terrestrial four-legged animals like amphibians. The most striking feature of this “living fossil” is its paired lobe fins that extend away from its body like legs and move in an alternating pattern, like a trotting horse.
As far as fish go, it’s just a shade prettier than the sea wolf.
Love at first sight apparently applies to men only:
Researchers believe that this difference between men and women can best be explained by the fact that the former use eye contact to seek fertile and fit mates. Meanwhile, the latter shy from making eye contact or drawing unwanted attention onto themselves for fear of unwanted pregnancies and single parenthood, it has been said.
The same study found that it takes approximately 8.2 seconds of eye contact for a man to decide if a woman is attractive. It’s hard not to stare at the eyes of photographer Rankin’s hypnotizing Eyescapes for a whole lot longer, but that’s a different type of beauty.
Attention milk product enthusiasts: The 2009-2014 World Outlook for 60-Milligram Containers of Fromage Frais has been released, and it won the dubious distinction of the Bookseller/Diagram Prize for Oddest Book Title of the Year.
The benefits of winning the award appear to be few. According to Philip Stone, The Bookseller’s charts editor:
“What does the future hold for these items?” Mr. Stone asked, speaking of fromage-frais cartons. “Well, given that fromage frais normally comes in 60-gram containers, one would assume that the world outlook for 0.06-gram containers of fromage frais is pretty bleak. But I’m not willing to pay £795 to find out.”
For those of you who are more into designer accessories than dairy almanacs, the Calf & Half pitcher lets you pour with udder abandon.
And if you’re looking for more clandestine cream, bring your own containers. Raw milk, once our only option, then treated as a potential health hazard, now finds itself on the black market.
From a post that includes all 120 crayon names, codes, and trivia:
The name Crayola was coined by Alice Binney, wife of company founder Edwin, and a former school teacher. She combined the words craie, which is French for chalk, and ola, for oleaginous, because crayons are made from petroleum based paraffin.
I don’t remember ever having scribbled with sticks of Manatee or Jazzberry Jam, but I do distinctly recall meticulously practicing my hearts and starts with the dulled point of Carnation Pink.
via Colour Lovers
Biogen is an art installation by Hanna von Goeler that’s inspired by the genetic engineering of tomatoes. Consisting of oil paintings, sculptures, a mobile made of tomato skin, and a model of a “tomato six pack,” von Goeler’s work is striking, and notably unappetizing.
Food Fray offers an equally fascinating, though less creative case against GM fruits and veggies. Both the art and the argument raise questions about the dangers of chewing with an open mind.
Santorio Santorio was an Italian physician in the 1700s who performed experiments so precise, they named him twice. He’s best known for Medicina Statica, a collection of research which, among other things, details his experiments with “insensible perspiration.” Santorio would weigh what he consumed both before and after it was digested. The results concluded that a fair amount of what he put into his body was lost through his skin.
Fascinating stuff from the University of Virginia’s vault of historical collections:
“Santorio made more than theoretical contributions to science and medicine. He is credited with inventing a wind gauge, a water current meter, the “pulsilogium” to measure the pulse rate, an instrument to remove bladder stones, and a trocar to drain fluid from cavities. Both he and his friend Galileo mentioned the thermoscope, a precursor to the thermometer. There is debate over the actual inventor, but it is known that Santorio was the first to add a numerical scale to the instrument.”
And putting him soundly in the “mad scientist” category is the fact that he invented a precursor to the waterbed. It’s unclear whether or not it was filled with insensible perspiration, but it was probably hard to hump on.
via Claude Moore Health Sciences Library
Metafilter feeds our needs for time-lapse photography and nutrition by linking to a full plate of time-lapse vegetation growth. Beans may be good for the heart, but pepper plants know how to shake it.
Cold fusion is back in the news.
After two to three weeks, the team found a small number of “triple tracks” in the plastic — three 8-micrometre-wide pits radiating from a point (see diagram, top right). The team says such a pattern occurs when a high-energy neutron strikes a carbon atom inside the plastic and shatters it into three charged alpha particles that rip through the plastic leaving tracks.
It’ll be interesting to see if this can be replicated and the source of the neutrons verified.
Newer posts
Older posts
Stay Connected