Advertise here with Carbon Ads

This site is made possible by member support. ❀️

Big thanks to Arcustech for hosting the site and offering amazing tech support.

When you buy through links on kottke.org, I may earn an affiliate commission. Thanks for supporting the site!

kottke.org. home of fine hypertext products since 1998.

πŸ”  πŸ’€  πŸ“Έ  😭  πŸ•³οΈ  🀠  🎬  πŸ₯”

kottke.org posts about science

Wrongly convicted

In 1981, Ray Towler was convicted of rape, kidnapping, and felonious assault of two young children and sentenced to life in prison. Twenty-nine years later, in 2010, DNA evidence proves he didn’t commit the crime and Towler is released from prison.

So many choices. Which car insurance. Which cereal. Which deodorant, toothpaste, toothbrush, soap, shampoo. Rows and rows of products. Varieties, sizes, colors. Which is cheaper? Which is better? What’s the best buy? Which gum to chew? When he went into prison there were, like, two kinds of chewing gum. Now there are a zillion. One of the small gifts he gives himself is trying all the gums. “I can spoil myself a little so long as I stay within my means,” he says. Papaya juice! Kiwi and strawberry nectar! Green tea! Arnold Palmer β€” he was a golfer when Towler went down. Now he is a drink, sweet and so incredibly thirst quenching.

He loves work. He got out May 5 and started working June 21. Hell, I’ve been vacationing for thirty years. He wears a smock and pushes a mail cart. He stops at all the cubicles, greets everyone with his friendly smile. Ray even loves commuting to work, especially now, in his new car, a black Ford Focus. He’s like a sixteen-year-old who can finally drive himself to school. It costs almost the same to park as it does to take the train.

File this one under “crying at work”.


A short history of the Earth

From physicist John Baez, a history of the major disasters that happened to the Earth: the Big Splat, the Late Heavy Bombardment, the Oxygen Catastrophe, and the Snowball Earth. The Big Splat is believed to have formed the Moon:

In 2004, the astrophysicist Robin Canup, at the Southwest Research Institute in Texas, published some remarkable computer simulations of the Big Splat. To get a moon like ours to form β€” instead of one too rich in iron, or too small, or wrong in other respects β€” she had to choose the right initial conditions. She found it best to assume Theia is slightly more massive than Mars: between 10% and 15% of the Earth’s mass. It should also start out moving slowly towards the Earth, and strike the Earth at a glancing angle.

The result is a very bad day. Theia hits the Earth and shears off a large chunk, forming a trail of shattered, molten or vaporized rock that arcs off into space. Within an hour, half the Earth’s surface is red-hot, and the trail of debris stretches almost 4 Earth radii into space. After 3 to 5 hours, the iron core of Theia and most of the the debris comes crashing back down. The Earth’s entire crust and outer mantle melts. At this point, a quarter of Theia has actually vaporized!

After a day, the material that has not fallen back down has formed a ring of debris orbiting the Earth. But such a ring would not be stable: within a century, it would collect to form the Moon we know and love. Meanwhile, Theia’s iron core would sink down to the center of the Earth.


How much is a planet worth?

Over at Boing Boing, Lee Billings has an interview with Greg Laughlin, an astrophysicist who recently came up with an equation for estimating the value of planets, a sort of Drake equation for cosmic economics.

This equation’s initial purpose, he wrote, was to put meaningful prices on the terrestrial exoplanets that Kepler was bound to discover. But he soon found it could be used equally well to place any planet-even our own-in a context that was simultaneously cosmic and commercial. In essence, you feed Laughlin’s equation some key parameters β€” a planet’s mass, its estimated temperature, and the age, type, and apparent brightness of its star β€” and out pops a number that should, Laughlin says, equate to cold, hard cash.

At the time, the exoplanet Gliese 581 c was thought to be the most Earth-like world known beyond our solar system. The equation said it was worth a measly $160. Mars fared better, priced at $14,000. And Earth? Our planet’s value emerged as nearly 5 quadrillion dollars. That’s about 100 times Earth’s yearly GDP, and perhaps, Laughlin thought, not a bad ballpark estimate for the total economic value of our world and the technological civilization it supports.


Auditioning replacements for the Moon

This video shows what various planets (Jupiter, Mars, etc.) would look like in the night sky if they orbited the Earth at the same distance as the Moon.

See also Imagining Earth with Saturn’s rings and Helvetica! In! Space!


Drinking water from ice cores

According to climate scientist Paul Mayewski, he and his team sometimes melt down unneeded ice cores that they’ve collected in places like Antarctica and drink the resulting water. The ice, as well as the air trapped within, can be more than a hundred thousand years old.

Probably the most exciting thing about it is when you have real ice β€” that’s where the snow has been gradually compacted and eventually formed into ice, and the density has increased. When that happens, if the ice is old, it will often trap air bubbles in it. Those air bubbles can contain carbon dioxide from ten thousand years ago or even a hundred thousand years ago. And when you put an ice cube of that ice in a glass of water, it pops. It has natural effervescence as those gas bubbles escape. You get a little a puff of air into your nostrils if you have your nose over the glass. It’s not as though it necessarily smells like anything β€” but when you think about the fact that the last time that anything smelled that air was a hundred thousand years ago, that’s pretty interesting.

For his wedding reception, Mayewski had water from “Greenland ice and Antarctic ice” for his guests to drink. (thx, finn)


The natural curves of human movement

No one has been able to figure out why humans can’t walk, swim, or even drive in straight lines without reference points. Instead, we go in circles:

(via df)


Superlinear scaling of cities

Luis Bettencourt of the Santa Fe Institute and his team have proposed a different way of looking at how exceptional cities are. The widely used per-capita is a linear measurement while cities’ attributes tend to scale nonlinearly (or superlinearly).

The researchers have shown, in fact, that with each doubling of city population, each inhabitant is, on average, 15 percent wealthier, 15 percent more productive, 15 percent more innovative, and 15 percent more likely to be victimized by violent crime regardless of the city’s geography or the decade in which you pull the data.

Remarkably, this 15 percent rule holds for a number of other statistics as well - so much so that if you tell Bettencourt and West the population of an anonymous city, they can tell you the average speed at which its inhabitants walk.

Scientists call this phenomenon “superlinear scaling.” Rather than metrics increasing proportionally with population - in a “linear,” or one-for-one fashion - measures that scale superlinearly increase consistently at a nonlinear rate greater than one for one.

“Almost anything that you can measure about a city scales nonlinearly, either showing economies in infrastructure or per capita gains in socioeconomic quantities,” Bettencourt says. “This is the reason we have cities in the first place. But if you don’t correct for these effects, you are not capturing the essence of particular places.”

Using this method, cities like LA, New York, and Houston are average while San Francisco and Boulder are above average.


Jenny McCarthy still confused

Jenny McCarthy just won’t call it quits on the whole vaccines cause autism thing. Cause she’s a mom! And moms love their children! And are strong! QED. And of course this was published by Huffington Post, the blog equivalent of Jenny McCarthy.


Autism study fraudulent

As if there was actually more evidence needed that vaccines don’t cause autism, the 1998 British study that linked autism to childhood vaccines was recently discovered to be an elaborate fraud. Not just incorrect, a fraud.

An investigation published by the British medical journal BMJ concludes the study’s author, Dr. Andrew Wakefield, misrepresented or altered the medical histories of all 12 of the patients whose cases formed the basis of the 1998 study β€” and that there was “no doubt” Wakefield was responsible.

“It’s one thing to have a bad study, a study full of error, and for the authors then to admit that they made errors,” Fiona Godlee, BMJ’s editor-in-chief, told CNN. “But in this case, we have a very different picture of what seems to be a deliberate attempt to create an impression that there was a link by falsifying the data.”

The full paper from BMJ is here.


Best science of 2010

Science magazine has named their top scientific breakthroughs of 2010 and the insights of the decade. The quantum paddle deservedly took the top spot:

“This year’s Breakthrough of the Year represents the first time that scientists have demonstrated quantum effects in the motion of a human-made object,” said Adrian Cho, a news writer for Science. “On a conceptual level that’s cool because it extends quantum mechanics into a whole new realm. On a practical level, it opens up a variety of possibilities ranging from new experiments that meld quantum control over light, electrical currents and motion to, perhaps someday, tests of the bounds of quantum mechanics and our sense of reality.”


Sex in outer space

From a paper published in the Journal of Cosmology entitled Sex On Mars: Pregnancy, Fetal Development, and Sex In Outer Space:

Humans are sexual beings and it can be predicted that male and female astronauts will engage in sexual relations during a mission to Mars, leading to conflicts and pregnancies and the first baby born on the Red Planet. Non-human primate and astronaut sexual behavior is reviewed including romantic conflicts involving astronauts who flew aboard the Space Shuttle and in simulated missions to Mars, and men and women team members in the Antarctic. The possibilities of pregnancy and the effects of gravity and radiation on the testes, ovaries, menstruation, and developing fetus, including a child born on Mars, are discussed. What may lead to and how to prevent sexual conflicts, sexual violence, sexual competition, and pregnancy are detailed. Recommendations include the possibility that male and female astronauts on a mission to Mars, should fly in separate space craft.


James Burke’s Connections online

Every episode of the classic science/history series Connections (as well as Connections 2 and 3) is available online at YouTube.

Connections is a ten-episode documentary television series created, written and presented by science historian James Burke. The series was produced and directed by Mick Jackson of the BBC Science & Features Department and first aired in 1978 (UK) and 1979 (USA). It took an interdisciplinary approach to the history of science and invention and demonstrated how various discoveries, scientific achievements, and historical world events were built from one another successively in an interconnected way to bring about particular aspects of modern technology.

Connections explores an “Alternative View of Change” (the subtitle of the series) that rejects the conventional linear and teleological view of historical progress. Burke contends that one cannot consider the development of any particular piece of the modern world in isolation. Rather, the entire gestalt of the modern world is the result of a web of interconnected events, each one consisting of a person or group acting for reasons of their own motivations (e.g. profit, curiosity, religious) with no concept of the final, modern result of what either their or their contemporaries’ actions finally led to. The interplay of the results of these isolated events is what drives history and innovation, and is also the main focus of the series and its sequels.

Here’s the first episode to get you started.

Warning: you may not be able to stop. If you’d like to watch the series in a less irritating format, you can always purchase it on DVD.


Socializing may improve mental function

But only if it’s friendly chat…competitive conversations don’t result in the same improvement. (I don’t think Words With Friends counts either…)

They found that engaging in brief (10 minute) conversations in which participants were simply instructed to get to know another person resulted in boosts to their subsequent performance on an array of common cognitive tasks. But when participants engaged in conversations that had a competitive edge, their performance on cognitive tasks showed no improvement.

“We believe that performance boosts come about because some social interactions induce people to try to read others’ minds and take their perspectives on things,” Ybarra said. “And we also find that when we structure even competitive interactions to have an element of taking the other person’s perspective, or trying to put yourself in the other person’s shoes, there is a boost in executive functioning as a result.”

I’ve noticed this effect with myself but I always thought it was the result of my introversion, i.e. competitive conversations are more stressful and sap energy and mental function more quickly than normal conversations. I know a couple of people who enjoy competitive conversation and I’ve largely steered clear of those interactions since realizing I always felt so blah afterwards.


One man cured of HIV

According to his doctors, a Berlin man has been cured of HIV because of a stem cell transplant.

Doctors who carried out a stem cell transplant on an HIV-infected man with leukaemia in 2007 say they now believe the man to have been cured of HIV infection as a result of the treatment, which introduced stem cells which happened to be resistant to HIV infection.

The man received bone marrow from a donor who had natural resistance to HIV infection; this was due to a genetic profile which led to the CCR5 co-receptor being absent from his cells. The most common variety of HIV uses CCR5 as its ‘docking station’, attaching to it in order to enter and infect CD4 cells, and people with this mutation are almost completely protected against infection.


Evidence of other universes

Cosmologists have discovered evidence that our universe has been “bruised” by collisions with other universes.

Today, another group says they’ve found something else in the echo of the Big Bang. These guys start with a different model of the universe called eternal inflation. In this way of thinking, the universe we see is merely a bubble in a much larger cosmos. This cosmos is filled with other bubbles, all of which are other universes where the laws of physics may be dramatically different to ours.

The findings are currently difficult to reproduce, but with better data on the way, scientists are hoping to get to the bottom of the matter in the next few years.


NASA study of arsenic-based life flawed?

Carl Zimmer in Slate:

Redfield blogged a scathing attack on Saturday. Over the weekend, a few other scientists took to the Internet as well. Was this merely a case of a few isolated cranks? To find out, I reached out to a dozen experts on Monday. Almost unanimously, they think the NASA scientists have failed to make their case. “It would be really cool if such a bug existed,” said San Diego State University’s Forest Rohwer, a microbiologist who looks for new species of bacteria and viruses in coral reefs. But, he added, “none of the arguments are very convincing on their own.” That was about as positive as the critics could get. “This paper should not have been published,” said Shelley Copley of the University of Colorado.

(thx, anil)


Albino redwoods

There may only be a few dozen albino redwoods in the world; they’re difficult to find so no one knows the real number. The albinos lack chlorophyll, making them unable to produce their own food, so they freeload off of a parent tree.

Albino redwood

KQED has a short video segment about the albino redwoods as well.


Discovered: a new form of life

NASA’s astrobiology announcement is that they’ve found a new kind of life that incorporates the normally toxic arsenic into its DNA.

Life like us uses a handful of basic elements in the majority of its biochemistry: carbon, hydrogen, oxygen, and nitrogen for the most part. But phosphorus is also a critical element in two major ways: it’s used as the backbone of the long, spiral-shaped DNA and RNA molecules (think of it as the winding support structure for a spiral staircase and you’ll get the picture), and it’s part of the energy transport mechanism for cells in the form of ATP (adenosine triphosphate). Without it, our cells would literally not be able to reproduce, and we’d be dead anyway if it were gone. There are many other ways phosphorus is used as well, including in cell membranes, bones, and so on. It’s a key element for all forms of life.

[…]

Amazingly, using radioisotope-tagged molecules containing arsenic, they were able to find that the microbes incorporated the arsenic into their very DNA! It’s hard to stress how shocking this is; as I understand it, saying something like that to a microbiologist without evidence would’ve had them slowly backing away from you and looking for weapons or an escape route.

I guessed wrong about what NASA was set to announce today, but the actual announcement is much more interesting than the mere discovery of extraterrestrial life. Aliens are inevitable β€” we’re going to find them sooner or later β€” but a new kind of DNA, that’s not something that happens every day. Exciting! (thx, jon)


Has NASA discovered extraterrestrial life?

Here’s a curious press release from NASA:

NASA will hold a news conference at 2 p.m. EST on Thursday, Dec. 2, to discuss an astrobiology finding that will impact the search for evidence of extraterrestrial life. Astrobiology is the study of the origin, evolution, distribution and future of life in the universe.

I did a little research on the news conference participants and found:

1. Pamela Conrad (a geobiologist) was the primary author of a 2009 paper on geology and life on Mars

2. Felisa Wolfe-Simon (an oceanographer) has written extensively on photosynthesis using arsenic recently (she worked on the team mentioned in this article)

3. Steven Benner (a biologist) is on the “Titan Team” at the Jet Propulsion Laboratory; they’re looking at Titan (Saturn’s largest moon) as an early-Earth-like chemical environment. This is likely related to the Cassini mission.

4. James Elser (an ecologist) is involved with a NASA-funded astrobiology program called Follow the Elements, which emphasizes looking at the chemistry of environments where life evolves (and not just looking at water or carbon or oxygen).

So, if I had to guess at what NASA is going to reveal on Thursday, I’d say that they’ve discovered arsenic on Titan and maybe even detected chemical evidence of bacteria utilizing it for photosynthesis (by following the elements). Or something like that. (thx, sippey)

Update: According to Alexis Madrigal, the answer to the hyperbolic question in the headline is “no”.

I’m sad to quell some of the @kottke-induced excitement about possible extraterrestrial life. I’ve seen the Science paper. It’s not that.


Stem cells to aid the blind

Clinical trials are about to begin where embryonic stem cells will be injected into the eyes of people with Stargardt’s macular degeneration.

Robert Lanza, the company’s chief scientific officer, said that the first patient could receive the stem cell transplants early in the new year and although the trial is designed primarily to assess safety, the first signs of visual improvement may be apparent within weeks. “Talking to the clinicians, we could see something in six weeks, that’s when we think we may see some improvements. It really depends on individual patients but that’s a reasonable time frame when something may start to happen,” Dr Lanza said.


On the merits of premature ejaculation

Evolutionary speaking, premature ejaculation may not be such a bad thing after all.

So given these basic biological facts, and assuming that ejaculation is not so premature that it occurs prior to intromission and sperm cells find themselves awkwardly outside of a woman’s reproductive tract flopping about like fish out of water, what, exactly, is so “premature” about premature ejaculation? In fact, all else being equal, in the ancestral past, wouldn’t there likely have been some reproductive advantages to ejaculating as quickly as possible during intravaginal intercourse-such as, oh, I don’t know, inseminating as many females as possible in as short a time frame as possible? or allowing our ancestors to focus on other adaptive behaviors aside from sex? or perhaps, under surreptitious mating conditions, doing the deed quickly and expeditiously without causing a big scene?

Still, for recreational sex, it blows. (As it were.)


When science goes backward

John Horgan argues that in some areas, science and technology are moving in the wrong direction. Among those areas are space colonization, the origin of life, and ending infectious disease.

Decades ago antibiotics, vaccines, pesticides, water chlorination and other public health measures were vanquishing diseases such as malaria, yellow fever, polio, whooping cough, tuberculosis and smallpox, particularly in First World nations. In The Coming Plague: Newly Emerging Diseases in a World out of Balance (Penguin, 1995), the journalist Laurie Garrett noted that in 1967 U.S. Surgeon General William Stewart said that it was “time to close the books on infectious diseases” (Garrett’s words) and shift resources toward non-infectious killers such as cancer and heart disease. The global eradication of smallpox in 1979 seemed to fulfill Stewart’s vision. Hopes for the end of infectious disease were soon crushed, however, by the emergence of AIDS, mutant flu viruses and antibiotic-resistant forms of old killers such as tuberculosis.


Mutations in genes and text not dissimilar

In a post called Mutated Manuscripts: The Evolution of Genes and Texts, Sam Arbesman compares genetic mutations with textual mutations caused by humans.

While fun to chronicle such similarities, these similarities can also be exploited in the same way. Mutational differences between DNA sequences can be used to understand the evolutionary history of a population, or even a group of species. And so too with variants of the same manuscript. A famous example of this is from a 1998 research article in the journal Nature that quantitatively studied the differences between the 80 surviving versions of Geoffrey Chaucer’s The Canterbury Tales. By subjecting the variants to a battery of genetic analyses, the researchers were able to better understand the contents of the ancestral version, Chaucer’s own copy!


Do animals think?

And if so, then what? Do animals feel? Do they have souls? This article is a nice overview of what we know about the thoughts and feelings of non-human animals.

But one by one, the berms we’ve built between ourselves and the beasts are being washed away. Humans are the only animals that use tools, we used to say. But what about the birds and apes that we now know do as well? Humans are the only ones who are empathic and generous, then. But what about the monkeys that practice charity and the elephants that mourn their dead? Humans are the only ones who experience joy and a knowledge of the future. But what about the U.K. study just last month showing that pigs raised in comfortable environments exhibit optimism, moving expectantly toward a new sound instead of retreating warily from it? And as for humans as the only beasts with language? Kanzi himself could tell you that’s not true.

All of that is forcing us to look at animals in a new way. With his 1975 book Animal Liberation, bioethicist Peter Singer of Princeton University launched what became known as the animal-rights movement. The ability to suffer, he argued, is a great cross-species leveler, and we should not inflict pain on or cause fear in an animal that we wouldn’t want to experience ourselves. This idea has never met with universal agreement, but new studies are giving it more legitimacy than ever. It’s not enough to study an animal’s brain, scientists now say; we need to know its mind.


Liquid magic

Under certain circumstances, you can mix liquids of different colors, then unmix them, and not violate the second law of thermodynamics.

(via fine structure)


LHC generates a mini Big Bang

By smashing together lead ions instead of protons, researchers at the Large Hadron Collider have produced a “mini-Big Bang”.

The collisions obtained were able to generate the highest temperatures and densities ever produced in an experiment. “This process took place in a safe, controlled environment, generating incredibly hot and dense sub-atomic fireballs with temperatures of over ten trillion degrees, a million times hotter than the centre of the Sun.

“At these temperatures even protons and neutrons, which make up the nuclei of atoms, melt resulting in a hot dense soup of quarks and gluons known as a quark-gluon plasma.” Quarks and gluons are sub-atomic particles β€” some of the building blocks of matter. In the state known as quark-gluon plasma, they are freed of their attraction to one another. This plasma is believed to have existed just after the Big Bang.


Seawater antennas

The US Navy is looking for a way to replace bulky antennas on warships with antennas made from seawater.

What they came up with is little more than an electromagnetic ring and a water pump. The ring, called a current probe, creates a magnetic field through which the pump shoots a steam of seawater (the salt is a key ingredient, as the tech relies on the magnetic induction properties of sodium chloride). By controlling the height and width of the, the operator can manipulate the frequency at which the antenna transmits and receives. An 80-foot-high stream can transmit and receive anywhere from 2 to 400 mHz, though much smaller streams can be used for varying other frequencies, ranging from HF through VHF to UHF.

Wow. (via bldgblog)


Conjoined twins…with a twist

Tatiana and Krista Hogan are conjoined twins who not only share a bit each other’s skulls but also parts of their brains. So are they two people with two brains & personalities or one person with one brain and two (split) personalities?

Adding to the conundrum, of course, are their linked brains, and the mysterious hints of what passes between them. The family regularly sees evidence of it. The way their heads are joined, they have markedly different fields of view. One child will look at a toy or a cup. The other can reach across and grab it, even though her own eyes couldn’t possibly see its location. “They share thoughts, too,” says Louise. “Nobody will be saying anything,” adds Simms, “and Tati will just pipe up and say, ‘Stop that!’ And she’ll smack her sister.” While their verbal development is delayed, it continues to get better. Their sentences are two or three words at most so far, and their enunciation is at first difficult to understand. Both the family, and researchers, anxiously await the children’s explanation for what they are experiencing.


What’s it like on the International Space Station?

For one thing, sleeping is more troublesome than you’d think, considering the remote location:

The onslaught of apparent days and nights would play havoc with astronauts’ body clocks, so a shutters-down and bedtime schedule is imposed by mission controllers. Each of the crew has a closet-like cabin where they can hook a sleeping bag to the wall and settle down for the night. Some strap pillows to their heads to make it feel more like lying down. The lights don’t go out completely, though. People dozing in orbit see streaks and bursts of bright colour caused by high-energy cosmic rays painlessly slamming into their retinas. Fans and air filters add to the distractions, so some astronauts wear ear plugs to block out the constant hum.

Unsurprisingly, falling asleep can take some getting used to. Just as you are nodding off, you can feel as though you’ve fallen off a 10-storey building. People who look half asleep will suddenly throw their heads back with a start and fling out their arms. It gets easier with time. One Russian crew member is renowned for doing without a sleeping bag and falling asleep wherever he ends the day. Anyone still awake after bedtime would see his snoozing form drift by, slowly bouncing off the walls, his course set by the air currents that gently pushed and pulled him.

Whoa! The whole thing is worth a read.


The world’s most famous brain

Lovely long piece in the November issue of Esquire about the brain of Henry Molaison, who you may have previously heard of as Patient H.M., aka the man who lacked the ability to remember anything for more than a couple of minutes. His brain has now been sliced into thin slices in an effort to construct a map of the human brain accurate to neuron-level.

Corkin first met Henry at Brenda Milner’s lab in Montreal in 1962, and over the years, as the mining of his mind has continued, she’s witnessed firsthand how Henry continues to give up riches, broadening our understanding of how memory works. But she’s also keenly aware of Henry’s enduring mysteries, has documented things about him that nobody can quite explain, not yet.

For example, Henry’s inability to recall postoperative episodes, an amnesia that was once thought to be complete, has revealed itself over the years to have some puzzling exceptions. Certain things have managed, somehow, to make their way through, to stick and become memories. Henry knows a president was assassinated in Dallas, though Kennedy’s motorcade didn’t leave Love Field until more than a decade after Henry left my grandfather’s operating room. Henry can hear the incomplete name of an icon β€” “Bob Dy …” β€” and complete it, even though in 1953 Robert Zimmerman was just a twelve-year-old chafing against the dead-end monotony of small-town Minnesota. Henry can tell you that Archie Bunker’s son-in-law is named Meathead.

How is this possible?

The piece is written by the grandson of the doctor who removed a portion of Molaison’s brain in an effort to cure his epilepsy.