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kottke.org posts about science

The slow-ass neutrino modem

With their ability to move seamlessly through walls, rocks, lead shielding, and entire planets, neutrinos would seem like a great choice for a new method of wireless communication. Scientists at Fermilab have demonstrated sending messages via neutrino but the downside is that the slippery particles can also move seamlessly through detectors.

In the Fermilab experiment, the physicists fired a proton beam into a carbon target to produce a shower of particles called pions and kaons that quickly decay into neutrinos. For every pulse of 22.5 trillion protons, the physicists registered an average of 0.81 neutrino with the 170-ton MINERvA detector.

That translates into a data rate of 0.1 bits/second, or just slightly faster than America Online’s dialup service circa 1992. (Hey, hey, if you liked that one, perhaps you’ll also enjoy my impression of Dana Carvey doing George H.W. Bush.)


My God, it’s full of galaxies

The VISTA telescope in Chile recently took a photo of the sky that contains over 200,000 galaxies. For reference, the Hubble Ultra-Deep Field image shows only about 10,000 galaxies (but sees further back in time, I think).

I’ve spent years studying all this, and it still sometimes gets to me: just how flipping BIG the Universe is! And this picture is still just a tiny piece of it: it’s 1.2 x 1.5 degrees in size, which means it’s only 0.004% of the sky! And it’s not even complete: more observations of this region are planned, allowing astronomers to see even deeper yet.

Here’s a full view of the image that looks sorta unimpressive:

Vista Deep Field

You can download the original 17,000 x 11,000 pixel image here (250 Mb, yo) for the full effect. As a preview, this is several levels of zoom in…just a tiny part of the full image.

Vista Deep Field 2


Some birds have a heads-up display compass

Birds can detect the magnetic field of the Earth, which gives them an incredible sense of direction. Curiously, this sense of direction doesn’t work in darkness. This led scientists to discover that some birds can actually see the directions overlaid on their normal vision, like a heads-up display.

According to the new model, when a photon of light from the Sun is absorbed by a special molecule in the bird’s eye, it can cause an electron to be kicked from its normal state into an alternative location a few nanometres away. Until the electron eventually relaxes back, it creates an ‘electric dipole field’ which can augment the bird’s vision - for example altering colours or brightness.

Crucially, the alignment of the molecule compared to the Earth’s magnetic field controls the time it takes for the electron to relax back, and so controls the strength of the effect on the bird’s vision.

There are many such molecules spread throughout the eye, with different orientations. So from the patterns on top of its vision, and the change of these patterns as it moves its head, the bird learns about the direction of Earth’s magnetic field.

(via @daveg)


MOAR Higgs boson evidence

The NY Times is reporting that a data bump “smells like the Higgs boson”. The odor is emanating not from CERN in Europe but from Fermilab near Chicago, where their Tevatron still flings some pretty fast particles.

“Based on the current Tevatron data and results compiled through December 2011 by other experiments, this is the strongest hint of the existence of a Higgs boson,” said the report, which will be presented on Wednesday by Wade Fisher of Michigan State University to a physics conference in La Thuile, Italy.

None of these results, either singly or collectively, are strong enough for scientists to claim victory. But the recent run of reports has encouraged them to think that the elusive particle, which is the key to mass and diversity in the universe, is within sight, perhaps as soon as this summer.

Update: The Tevatron is no longer flinging, having been shut down in 2011 due to budget cuts. Which makes the Higgs discovery a little bittersweet, to say the least. (thx, miles)


Time traveling neutrinos oopsie daisy

Remember those time traveling neutrinos that they found in Italy? It is likely that a faulty connection between the GPS and the computer collecting data is to blame for the time travel illusion.

According to sources familiar with the experiment, the 60 nanoseconds discrepancy appears to come from a bad connection between a fiber optic cable that connects to the GPS receiver used to correct the timing of the neutrinos’ flight and an electronic card in a computer. After tightening the connection and then measuring the time it takes data to travel the length of the fiber, researchers found that the data arrive 60 nanoseconds earlier than assumed.

Neutrinos? More like Nintendo…they forgot to blow in the cartridge. (via @tcarmody)


Is your cat making you crazy?

There is increasing evidence that a parasite called Toxoplasma gondii, which many humans have gotten from cat feces, can rewire our brains and modify human behavior in unexpected ways.

The parasite, which is excreted by cats in their feces, is called Toxoplasma gondii (T. gondii or Toxo for short) and is the microbe that causes toxoplasmosis-the reason pregnant women are told to avoid cats’ litter boxes. Since the 1920s, doctors have recognized that a woman who becomes infected during pregnancy can transmit the disease to the fetus, in some cases resulting in severe brain damage or death. T. gondii is also a major threat to people with weakened immunity: in the early days of the AIDS epidemic, before good antiretroviral drugs were developed, it was to blame for the dementia that afflicted many patients at the disease’s end stage. Healthy children and adults, however, usually experience nothing worse than brief flu-like symptoms before quickly fighting off the protozoan, which thereafter lies dormant inside brain cells-or at least that’s the standard medical wisdom.

But if Flegr is right, the “latent” parasite may be quietly tweaking the connections between our neurons, changing our response to frightening situations, our trust in others, how outgoing we are, and even our preference for certain scents. And that’s not all. He also believes that the organism contributes to car crashes, suicides, and mental disorders such as schizophrenia. When you add up all the different ways it can harm us, says Flegr, “Toxoplasma might even kill as many people as malaria, or at least a million people a year.”


The scale of the Universe

The Scale of the Universe 2 is an interactive Powers of Ten that takes you from the Planck length all the way up to the size of the observable Universe. That’s more than 60 orders of magnitude! Also interesting that the smallest things (Planck length, strings, branes) are millions of times smaller compared to human scale than the observable Universe is larger. Plenty of room at the bottom indeed.


The human body’s microbial ecosystem

In this transcript of a talk given to the attendees of the Joint Summits on Translational Science, Carl Zimmer highlights an important aspect of understanding the human body and how to treat its many maladies: the ecosystem of microbes.

The microbes in your body at this moment outnumber your cells by ten to one. And they come in a huge diversity of species — somewhere in the thousands, although no one has a precise count yet. By some estimates there are twenty million microbial genes in your body: about a thousand times more than the 20,000 protein-coding genes in the human genome. So the Human Genome Project was, at best, a nice start. If we really want to understand all the genes in the human body, we have a long way to go.

Now you could say “Who cares? They’re just wee animalcules.” Those wee animacules are worth caring about for many reasons. One of the most practical of those reasons is that they have a huge impact on our “own” health. Our collection of microbes-the microbiome-is like an extra organ of the human body. And while an organ like the heart has only one function, the microbiome has many.

When food comes into the gut, for example, microbes break some of them down using enzymes we lack. Sometimes the microbes and our own cells have an intimate volley, in which bacteria break down a molecule part way, our cells break it down some more, the bacteria break it down even more, and then finally we get something to eat.

Another thing that the microbiome does is manage the immune system. Certain species of resident bacteria, like Bacteroides fragilis, produce proteins that tamp down inflammation. When scientists rear mice that don’t have any germs at all, they have a very difficult time developing a normal immune system. The microbiome has to tutor the immune system in how to do its job properly. It also acts like an immune system of its own, fighting off invading microbes, and helping to heal wounds.

While the microbiome may be an important organ, it’s a peculiar one. It’s not one solid hunk of flesh. It’s an ecosystem, made up of thousands of interacting species.


On the occasion of your going into space

Scott Carpenter was one of the original seven Mercury astronauts and the second American to orbit the Earth. Just before he went into space, his father wrote this wonderful letter.

And I venture to predict that after all the huzzas have been uttered and the public acclaim is but a memory, you will derive the greatest satisfaction from the serene knowledge that you have discovered new truths. You can say to yourself: this I saw, this I experienced, this I know to be the truth. This experience is a precious thing; it is known to all researchers, in whatever field of endeavour, who have ventured into the unknown and have discovered new truths.


The whisky and water trick

I don’t know if the nudie playing cards are absolutely essential, but this trick is pretty neat.

(via @itscolossal)


Replacing our old worn-out kilogram

The standard measure for the kilogram needs to change because, offically speaking, the universe is gaining mass. The trick is finding a technique that ties the kilogram to a fundamental constant (like the second is tied to energy transition times in cesium atoms).

Familiarly known as Le Grand K and held in a vault just outside of Paris under three bell jars, [the international prototype kilogram] dates back to the 1880s, when it was forged by the British metallurgist George Matthey from an alloy of nine-tenths platinum and one-tenth iridium. As a metric unit, the kilogram is “equal to the mass of the international prototype,” according to the official definition. In other words, as metrologists like to point out, it has the remarkable property of never gaining or losing mass. By definition, any physical change to it alters the mass of everything in the cosmos.

Aside from a yearly ceremonial peek inside its vault, which can be unlocked only with three keys held by three different officials, the prototype goes unmolested for decades. Yet every 40 years or so, protocol requires that it be washed with alcohol, dried with a chamois cloth, given a steam bath, allowed to air dry, and then weighed against the freshly scrubbed national standards, all transported to France. It is also compared to six temoins (witnesses), nominally identical cylinders that are stored in the vault alongside the prototype. The instruments used to make these comparisons are phenomenally precise, capable of measuring differences of 0.0000001 percent, or one part in 1 billion. But comparisons since the 1940s have revealed a troublesome drift. Relative to the t’emoins and to the national standards, Le Grand K has been losing weight — or, by the definition of mass under the metric system, the rest of the universe has been getting fatter. The most recent comparison, in 1988, found a discrepancy as large as five-hundredths of a milligram, a bit less than the weight of a dust speck, between Le Grand K and its official underlings.


A Brief History of Time by Errol Morris

The sound and picture are poor, but the entirety of Errol Morris’ A Brief History of Time is available on YouTube.

Featuring music from Philip Glass, the film is a documentary about Stephen Hawking and his ideas about the universe. Morris recently stated on Twitter:

Yes. I plan to re-release [A Brief History of Time]. (It was never properly color corrected and is one of my best films.)

The film is difficult, if not impossible, to find on DVD and isn’t available on Netflix, Amazon Instant Video, or iTunes. And as far as I can tell, the soundtrack was never released either.


Baby/mother cell exchange

During pregnancy, the mother and fetus exchange cells and some of those cells can live on forever in the two bodies after the child is born.

During pregnancy, cells sneak across the placenta in both directions. The fetus’s cells enter his mother, and the mother’s cells enter the fetus. A baby’s cells are detectable in his mother’s bloodstream as early as four weeks after conception, and a mother’s cells are detectable in her fetus by week 13. In the first trimester, one out of every fifty thousand cells in her body are from her baby-to-be (this is how some noninvasive prenatal tests check for genetic disorders). In the second and third trimesters, the count is up to one out of every thousand maternal cells. At the end of the pregnancy, up to 6 percent of the DNA in a pregnant woman’s blood plasma comes from the fetus. After birth, the mother’s fetal cell count plummets, but some stick around for the long haul. Those lingerers create their own lineages. Imagine colonies in the motherland.

Moms usually tolerate the invasion. This is why skin, organ, and bone marrow transplants between mother and child have a much higher success rate than between father and child.

Whoa.


Wipeout track using quantum levitation

The quantum levitation videos I showed you a couple months ago are pretty cool, but scientists scienticiens at the Japan Institute of Science and Technology have upped the game by using QL CGI to build a real-world Wipeout track.

Say it with me: science!! Also, do Rainbow Road next! (via ★interesting)

Update: Say it with me: advertising! Or some other such nonsense. Several people have alerted me that this video is a fake…you can see vapor trails passing through walls, etc. Boo. Boo-urns. (thx, all)


Eight sure-fire weight loss tips

From New Scientist, a list of eight different ways to lose weight that actually work. Because science!

If your idea of a holiday workout is lifting glasses of beer late into the night, then it’s not just the extra calories you need to worry about. Randy Nelson and his team at Ohio State University in Columbus found that mice exposed to light at night weighed 10 per cent more at the end of the eight-week study than mice that had experienced a standard light/dark cycle, even though they ate the same total number of calories and did the same amount of exercise.

(via @daveg)


Whiskey fungus mystery

A thick black fungus growing near a whiskey distillery warehouse in Ontario prompted mycologist James Scott to track the fungus all the way back to its discovery in France in 1881.

When he arrived at the warehouse, the first thing he noticed (after “the beautiful, sweet, mellow smell of aging Canadian whiskey,” he says) was the black stuff. It was everywhere — on the walls of buildings, on chain-link fences, on metal street signs, as if a battalion of Dickensian chimney sweeps had careened through town. “In the back of the property, there was an old stainless steel fermenter tank,” Scott says. “It was lying on its side, and it had this fungus growing all over it. Stainless steel!” The whole point of stainless steel is that things don’t grow on it.


Slow motion magnets

If you drop a bunch of neodymium magnets down through a thick-walled copper pipe, an effect called eddy current braking will slow the magnets’ fall even though there’s no direct magnetic attraction between the copper and the magnets.

Science! (via make)


Exact nonsense

From Penn Jillette’s book, God, No!: Signs You May Already Be an Atheist and Other Magical Tales:

There is no god and that’s the simple truth. If every trace of any single religion died out and nothing were passed on, it would never be created exactly that way again. There might be some other nonsense in its place, but not that exact nonsense. If all of science were wiped out, it would still be true and someone would find a way to figure it all out again.

(via mlkshk)


Vocal fry

College-age women end sentences in the lowest vocal register, a creaky vibration called vocal fry, possibly to broadcast themselves as part of a social group.

Vocal fry…great term! Here’s a demo of how the effect is used in singing.

Update: About a minute into this clip from Louie, there’s a great example of vocal fry used by “college-age women [to] end sentences”:

(via @dalton)


Camera shooting at a trillion frames/sec can see photons move

At the beginning of this video, Ramesh Raskar, associate professor at the MIT Media Lab, announces calmly:

We have built a virtual slow-motion camera where we can see photons, or light particles, moving through space.

Yeah, no biggie.


Mo methane, mo problems

Russian scientists are seeing dramatically increased levels of methane coming from melting permafrost in the East Siberian Ice Shelf. If enough methane is released, that could really put a foot on the gas pedal with this whole global warming thing.

“Earlier we found torch-like structures like this but they were only tens of metres in diameter. This is the first time that we’ve found continuous, powerful and impressive seeping structures, more than 1,000 metres in diameter. It’s amazing,” Dr Semiletov said. “I was most impressed by the sheer scale and high density of the plumes. Over a relatively small area we found more than 100, but over a wider area there should be thousands of them.”

Scientists estimate that there are hundreds of millions of tonnes of methane gas locked away beneath the Arctic permafrost, which extends from the mainland into the seabed of the relatively shallow sea of the East Siberian Arctic Shelf. One of the greatest fears is that with the disappearance of the Arctic sea-ice in summer, and rapidly rising temperatures across the entire region, which are already melting the Siberian permafrost, the trapped methane could be suddenly released into the atmosphere leading to rapid and severe climate change.


Elephants and human evolution

Elephants were the “perfect food package” for pre-human hominids (they were slow with a good fat-to-protein ratio) and their extinction in the Middle East (and Africa) caused those hominids to evolve to be more like modern humans.

When elephants began to die out, Homo erectus “needed to hunt many smaller, more evasive animals. Energy requirements increased, but with plant and protein intake limited, the source had to come from fat. He had to become calculated about hunting,” Ben-Dor says, noting that this change is evident in the physical appearance of modern humans, lighter than Homo erectus and with larger brains.

(via @daveg)


Higgs boson found?

Rumor has it that the LHC at CERN has found the Higgs boson. The news runs contrary to some earlier speculation.

The teams are sworn to secrecy, but various physics blogs, and the canteens at Cern, are alive with talk of a possible sighting of the Higgs, and with a mass inline with what many physicists would expect.

Since the Higgs’ nickname is the God particle, does this count as the Second Coming? (@gavinpurcell)


Ten things everyone should know about time

From Sean Carroll at Cosmic Variance, a list of facts and very strong opinions about the nature of time.

4. You live in the past. About 80 milliseconds in the past, to be precise. Use one hand to touch your nose, and the other to touch one of your feet, at exactly the same time. You will experience them as simultaneous acts. But that’s mysterious - clearly it takes more time for the signal to travel up your nerves from your feet to your brain than from your nose. The reconciliation is simple: our conscious experience takes time to assemble, and your brain waits for all the relevant input before it experiences the “now.” Experiments have shown that the lag between things happening and us experiencing them is about 80 milliseconds.

5. Your memory isn’t as good as you think. When you remember an event in the past, your brain uses a very similar technique to imagining the future. The process is less like “replaying a video” than “putting on a play from a script.” If the script is wrong for whatever reason, you can have a false memory that is just as vivid as a true one. Eyewitness testimony, it turns out, is one of the least reliable forms of evidence allowed into courtrooms.


Yeti crab is bacteria farmer

A recently discovered species of crab grows gardens of bacteria on its claws on which to feed.

The bristles that cover the crab’s claws and body are coated in gardens of symbiotic bacteria, which derive energy from the inorganic gases of the seeps. The crab eats the bacteria, using comb-like mouthparts to harvest them from its bristles. […] Thurber thinks that K. puravida waves its claws to actively farm its bacterial gardens: movements stir up the water around the bacteria, ensuring that fresh supplies of oxygen and sulphide wash over them and helping them to grow. “This ‘dance’ is extraordinary and comical,” says Van Dover. “We’ve never seen this strategy before.”

(via @noahwg)


Stephen Colbert in conversation with Neil deGrasse Tyson

80-minute video of a conversation between Neil deGrasse Tyson and of an out-of-character Stephen Colbert “about science, society, and the universe”. Someone needs to get this on YouTube or something…the video streaming is slooooow.

Update: Ah, here’s a mirror on YouTube. (thx, aaron)


The ice finger of death

When dense briny water (left behind by newly formed sea ice) sinks, it freezes the water around it, forming an icicle that stretches to the sea floor. Then it freezes water and wildlife on the sea floor. David Attenborough narrates:


Meet LUCA, our distant Earth-sized ancestor

Here’s an interesting hypothesis: that all current life on Earth originated from a planet-wide super-organism named LUCA.

The latest results suggest LUCA was the result of early life’s fight to survive, attempts at which turned the ocean into a global genetic swap shop for hundreds of millions of years. Cells struggling to survive on their own exchanged useful parts with each other without competition — effectively creating a global mega-organism.

It was around 2.9 billion years ago that LUCA split into the three domains of life: the single-celled bacteria and archaea, and the more complex eukaryotes that gave rise to animals and plants (see timeline). It’s hard to know what happened before the split. Hardly any fossil evidence remains from this time, and any genes that date that far back are likely to have mutated beyond recognition.

(via @daveg)


Quantum levitation!

What the what? This video gives a little more explanation into the effect at work here (superconductivity + quantum trapping of the magnetic field in quantum flux tubes) and an awesome demonstration of a crude rail system. You can almost hear your tiny mind explode when the “train” goes upside-down.

Wingardium Leviosa! (via stellar)


She blinded me with neuroscience

In a 2008 paper called The Seductive Allure of Neuroscience Explanations, a group from Yale University demonstrated that including neuroscientific information in explanations of psychological phenomena makes the explanations more appealing, even if the neuroscientific info is irrelevant.

Explanations of psychological phenomena seem to generate more public interest when they contain neuroscientific information. Even irrelevant neuroscience information in an explanation of a psychological phenomenon may interfere with people’s abilities to critically consider the underlying logic of this explanation.

I don’t know if I buy this. Perhaps if the authors had explained their results relative to how the human brain functions…